PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PSME_00037716-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Acrogymnospermae; Pinidae; Pinales; Pinaceae; Pseudotsuga
Family MYB_related
Protein Properties Length: 158aa    MW: 18125 Da    PI: 4.7256
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PSME_00037716-RAgenomePRSView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding32.81.6e-10109147545
                       -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       +++E++l+++++k+lG + W++Ia +++  Rt +++  +w 
  PSME_00037716-RA 109 SADEEDLIIRLHKLLGDR-WALIAGRLP-WRTTEEIEKYWK 147
                       799*************99.*********.***********7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007178.7E-6104152IPR001005SANT/Myb domain
SuperFamilySSF466892.18E-7105147IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.2E-12109147IPR009057Homeodomain-like
PfamPF002491.1E-9109148IPR001005SANT/Myb domain
PROSITE profilePS500906.481109147IPR017877Myb-like domain
CDDcd001671.06E-7109148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 158 aa     Download sequence    Send to blast
MHRAQEPFGL LLSIQPQFRP NGHSSYIFCS FQANSRPTDT IYTYSLQTLF ILQEQKLELN  60
SGLKFSRKQS SSSNAMDAEK LQQQFSEGEG ESDSPGGRSG QESWDSDISA DEEDLIIRLH  120
KLLGDRWALI AGRLPWRTTE EIEKYWKMRS QETDQSSD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1194714e-87BT119471.1 Picea glauca clone GQ04106_B24 mRNA sequence.
GenBankEF0836964e-87EF083696.1 Picea sitchensis clone WS02910_O04 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA9NQX07e-40A9NQX0_PICSI; Putative uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01060.17e-16CAPRICE-like MYB3